ClinVar Miner

Submissions for variant NC_000007.13:g.(?_6045513)_(6045672_?)dup

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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000796143 SCV000935640 likely pathogenic Hereditary nonpolyposis colorectal neoplasms 2022-10-08 criteria provided, single submitter clinical testing This variant results in a copy number gain of the genomic region encompassing exon(s) 2 of the PMS2 gene. While the exact position of this variant cannot be determined from the data, sub-genic copy number gains are generally in tandem (PMID: 25640679). This variant is predicted to be out-of-frame, and may result in an absent or disrupted protein product. Loss-of-function variants in PMS2 are known to be pathogenic (PMID: 21376568, 24362816). This variant has not been reported in the literature in individuals affected with PMS2-related conditions. In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic.

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