ClinVar Miner

Submissions for variant NC_000007.14:g.(?_5973399)_(5973552_?)del

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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001033243 SCV001196550 pathogenic Hereditary nonpolyposis colorectal neoplasms 2020-01-08 criteria provided, single submitter clinical testing This variant is a gross deletion of the genomic region encompassing exon 15 of the PMS2 gene. The 5' boundary is likely confined to intron 14. The 3' end of this event is unknown as it extends through the termination codon beyond the assayed region for this gene and may encompass additional genes. While this deletion is not anticipated to result in nonsense mediated decay, it is expected to create a truncated protein product or disrupt mRNA translation. This variant has been observed to segregate with Lynch syndrome in a family (PMID: 21618646) and has also been reported in a family affected with constitutional mismatch repair deficiency syndrome (PMID: 24440087). For these reasons, this variant has been classified as Pathogenic.

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