ClinVar Miner

Submissions for variant NC_000015.10:g.(?_40412971)_(40418283_?)del

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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000800043 SCV000939740 likely pathogenic Isovaleryl-CoA dehydrogenase deficiency 2021-08-12 criteria provided, single submitter clinical testing This variant is a gross deletion of the genomic region encompassing exon(s) 7-12 of the IVD gene, which includes the termination codon. This deletion extends beyond the assayed region for this gene and therefore may encompass additional genes. While this deletion is not anticipated to lead to nonsense mediated decay, it is expected to alter mRNA translation or result in a truncated protein product. A similar copy number variant has been observed in individual(s) with isovaleric acidemia (Invitae). This variant disrupts the p. Ala314 amino acid residue in IVD. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 9665741, 15486829, 27904153). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic.

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