Total submissions: 1
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Invitae | RCV000708206 | SCV000837316 | pathogenic | Generalized juvenile polyposis/juvenile polyposis coli | 2018-05-07 | criteria provided, single submitter | clinical testing | This variant is a gross deletion of the genomic region encompassing exons 11-12 of the SMAD4 gene. The 5' boundary is likely confined to intron 10. The 3' end of this event is unknown as it extends through the termination codon beyond the assayed region for this gene and may encompass additional genes. While this deletion is not anticipated to result in nonsense mediated decay, it is expected to create a truncated protein product or disrupt mRNA translation. Deletion of exon 11-12 has not been reported in the literature in individuals with SMAD4-related disease. A different truncation (p.His530Thrfs*47) that lies downstream of this deletion has been determined to be pathogenic (PMID: 18178612, Invitae). This suggests that deletion of this region of the SMAD4 protein is causative of disease. For these reasons, this variant has been classified as Pathogenic. |