ClinVar Miner

Submissions for variant NC_000023.11:g.(?_153743201)_(153743755_?)del

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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000812676 SCV000952998 pathogenic Adrenoleukodystrophy 2018-12-14 criteria provided, single submitter clinical testing This variant is a gross deletion of the genomic region encompassing exons 8-10 of the ABCD1 gene. The 5' boundary is likely confined to intron 7. The 3' end of this event is unknown as it extends through the termination codon beyond the assayed region for this gene and may encompass additional genes. This deletion may result in nonsense mediated decay, create a truncated protein product or disrupt mRNA translation. This deletion has been observed in multiple individuals affected with X-linked adrenoleukodystrophy (PMID: 7581394, 20661612). This deletion disrupts the p.Ser606 amino acid residue in ABCD1. A missense substitution at this residue, (p.Ser606Leu), has been observed in individuals with ABCD1-related conditions (PMID: 7581394, 8040304, 10190819, 12624723, 14767898, 15811009, 22479560, Invitae), suggesting that it is a clinically significant residue. As a result, variants that disrupt this residue are likely to be causative of disease. For these reasons, this variant has been classified as Pathogenic.

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