ClinVar Miner

Submissions for variant NM_000023.4(SGCA):c.157+1G>A

gnomAD frequency: 0.00001  dbSNP: rs113109898
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001050871 SCV001215000 pathogenic Autosomal recessive limb-girdle muscular dystrophy type 2D 2023-07-27 criteria provided, single submitter clinical testing For these reasons, this variant has been classified as Pathogenic. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site. ClinVar contains an entry for this variant (Variation ID: 847344). Disruption of this splice site has been observed in individuals with SGCA-related conditions (PMID: 17562833, 30919934). This variant is not present in population databases (gnomAD no frequency). This sequence change affects a donor splice site in intron 2 of the SGCA gene. It is expected to disrupt RNA splicing. Variants that disrupt the donor or acceptor splice site typically lead to a loss of protein function (PMID: 16199547), and loss-of-function variants in SGCA are known to be pathogenic (PMID: 9192266).
Fulgent Genetics, Fulgent Genetics RCV001050871 SCV002806550 pathogenic Autosomal recessive limb-girdle muscular dystrophy type 2D 2021-07-29 criteria provided, single submitter clinical testing
Genome-Nilou Lab RCV001050871 SCV003931636 pathogenic Autosomal recessive limb-girdle muscular dystrophy type 2D 2023-02-08 criteria provided, single submitter clinical testing
Baylor Genetics RCV001050871 SCV004203170 pathogenic Autosomal recessive limb-girdle muscular dystrophy type 2D 2023-07-24 criteria provided, single submitter clinical testing

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