ClinVar Miner

Submissions for variant NM_000032.5(ALAS2):c.1355G>T (p.Arg452Leu)

gnomAD frequency: 0.00001  dbSNP: rs863223904
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Revvity Omics, Revvity RCV003491883 SCV004238424 likely pathogenic not provided 2023-05-31 criteria provided, single submitter clinical testing
Labcorp Genetics (formerly Invitae), Labcorp RCV003491883 SCV004631181 uncertain significance not provided 2023-11-11 criteria provided, single submitter clinical testing This sequence change replaces arginine, which is basic and polar, with leucine, which is neutral and non-polar, at codon 452 of the ALAS2 protein (p.Arg452Leu). This variant is not present in population databases (gnomAD no frequency). This missense change has been observed in individual(s) with congenital sideroblastic anemia (PMID: 31338833). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) has been performed at Invitae for this missense variant, however the output from this modeling did not meet the statistical confidence thresholds required to predict the impact of this variant on ALAS2 protein function. This variant disrupts the p.Arg452 amino acid residue in ALAS2. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 7592563, 9020366, 16540354, 21309041, 24829177, 32297424). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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