ClinVar Miner

Submissions for variant NM_000036.3(AMPD1):c.1273C>T (p.Arg425Cys)

gnomAD frequency: 0.00003  dbSNP: rs187527797
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV002034003 SCV002316181 uncertain significance Muscle AMP deaminase deficiency 2022-07-12 criteria provided, single submitter clinical testing This sequence change replaces arginine, which is basic and polar, with cysteine, which is neutral and slightly polar, at codon 458 of the AMPD1 protein (p.Arg458Cys). This variant is present in population databases (rs187527797, gnomAD 0.004%). This variant has not been reported in the literature in individuals affected with AMPD1-related conditions. ClinVar contains an entry for this variant (Variation ID: 1521611). Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be disruptive. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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