ClinVar Miner

Submissions for variant NM_000038.6(APC):c.136-3C>T

dbSNP: rs1060503361
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV003651889 SCV000552739 uncertain significance Familial adenomatous polyposis 1 2022-12-01 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Variants that disrupt the consensus splice site are a relatively common cause of aberrant splicing (PMID: 17576681, 9536098). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant is not likely to affect RNA splicing. ClinVar contains an entry for this variant (Variation ID: 411538). This variant has not been reported in the literature in individuals affected with APC-related conditions. This variant is not present in population databases (gnomAD no frequency). This sequence change falls in intron 2 of the APC gene. It does not directly change the encoded amino acid sequence of the APC protein. It affects a nucleotide within the consensus splice site.
Color Diagnostics, LLC DBA Color Health RCV001179769 SCV001344512 likely benign Hereditary cancer-predisposing syndrome 2020-01-13 criteria provided, single submitter clinical testing
GeneDx RCV001577551 SCV001804948 likely benign not provided 2019-12-13 criteria provided, single submitter clinical testing
Ambry Genetics RCV001179769 SCV002699650 likely benign Hereditary cancer-predisposing syndrome 2021-10-26 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

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