ClinVar Miner

Submissions for variant NM_000038.6(APC):c.2884del (p.Asp962fs) (rs1561580546)

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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000697265 SCV000825865 pathogenic Familial adenomatous polyposis 1 2018-01-23 criteria provided, single submitter clinical testing This sequence change results in a premature translational stop signal in the APC gene (p.Asp962Ilefs*3). While this is not anticipated to result in nonsense mediated decay, it is expected to disrupt the last 1,882 amino acids of the APC protein. This variant is not present in population databases (ExAC no frequency). This variant has been reported in a family affected with familial adenomatous polyposis (PMID: 11247896). A different truncation (p.Glu1309Argfs*11) that lies downstream of this variant has been determined to be pathogenic (PMID: 24664542, 20223039, 9101302, 8162022, 20685668). This suggests that deletion of this region of the APC protein is causative of disease. For these reasons, this variant has been classified as Pathogenic.

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