ClinVar Miner

Submissions for variant NM_000038.6(APC):c.4391A>T (p.Glu1464Val)

dbSNP: rs112961968
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Color Diagnostics, LLC DBA Color Health RCV001180189 SCV001345057 uncertain significance Hereditary cancer-predisposing syndrome 2019-04-18 criteria provided, single submitter clinical testing
Invitae RCV003769960 SCV002114231 uncertain significance Familial adenomatous polyposis 1 2022-08-12 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may create or strengthen a splice site. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Possibly Damaging"; Align-GVGD: "Class C15"). ClinVar contains an entry for this variant (Variation ID: 921045). This variant has not been reported in the literature in individuals affected with APC-related conditions. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces glutamic acid, which is acidic and polar, with valine, which is neutral and non-polar, at codon 1464 of the APC protein (p.Glu1464Val).
Ambry Genetics RCV001180189 SCV002633062 uncertain significance Hereditary cancer-predisposing syndrome 2022-09-13 criteria provided, single submitter clinical testing The p.E1464V variant (also known as c.4391A>T), located in coding exon 15 of the APC gene, results from an A to T substitution at nucleotide position 4391. The glutamic acid at codon 1464 is replaced by valine, an amino acid with dissimilar properties. This amino acid position is not well conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

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