ClinVar Miner

Submissions for variant NM_000038.6(APC):c.4525C>G (p.Leu1509Val) (rs572839648)

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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV000129621 SCV000184414 uncertain significance Hereditary cancer-predisposing syndrome 2013-10-03 criteria provided, single submitter clinical testing
Color RCV000129621 SCV000905986 uncertain significance Hereditary cancer-predisposing syndrome 2018-05-22 criteria provided, single submitter clinical testing
Invitae RCV000814268 SCV000954670 uncertain significance Familial adenomatous polyposis 1 2018-07-10 criteria provided, single submitter clinical testing This sequence change replaces leucine with valine at codon 1509 of the APC protein (p.Leu1509Val). The leucine residue is highly conserved and there is a small physicochemical difference between leucine and valine. This variant is not present in population databases (ExAC no frequency). This variant has not been reported in the literature in individuals with APC-related disease. ClinVar contains an entry for this variant (Variation ID: 141216). Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be disruptive, but these predictions have not been confirmed by published functional studies and their clinical significance is uncertain. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may create or strengthen a splice site, but this prediction has not been confirmed by published transcriptional studies. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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