ClinVar Miner

Submissions for variant NM_000038.6(APC):c.458A>C (p.Lys153Thr)

dbSNP: rs754553913
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Color Diagnostics, LLC DBA Color Health RCV001190601 SCV001358118 uncertain significance Hereditary cancer-predisposing syndrome 2020-01-02 criteria provided, single submitter clinical testing This missense variant replaces lysine with threonine at codon 153 of the APC protein. Computational prediction is inconclusive regarding the impact of this variant on protein structure and function (internally defined REVEL score threshold 0.5 < inconclusive < 0.7, PMID: 27666373). Splice site prediction tools suggest that this variant may not impact RNA splicing. To our knowledge, functional studies have not been performed for this variant. This variant has not been reported in individuals affected with hereditary cancer in the literature. This variant has not been identified in the general population by the Genome Aggregation Database (gnomAD). The available evidence is insufficient to determine the role of this variant in disease conclusively. Therefore, this variant is classified as a Variant of Uncertain Significance.
Ambry Genetics RCV001190601 SCV004059049 uncertain significance Hereditary cancer-predisposing syndrome 2023-07-09 criteria provided, single submitter clinical testing The p.K153T variant (also known as c.458A>C), located in coding exon 4 of the APC gene, results from an A to C substitution at nucleotide position 458. The lysine at codon 153 is replaced by threonine, an amino acid with similar properties. This amino acid position is conserved. In addition, the in silico prediction for this alteration is inconclusive. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

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