ClinVar Miner

Submissions for variant NM_000038.6(APC):c.5562del (p.Cys1855fs)

dbSNP: rs1064793363
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000480816 SCV000565917 pathogenic not provided 2015-03-18 criteria provided, single submitter clinical testing This deletion of one nucleotide in APC is denoted c.5562delC at the cDNA level and p.Cys1855ValfsX8 (C1855VfsX8) at the protein level. The normal sequence, with the base that is deleted in brackets, is CTTA[C]TGTT. The deletion causes a frameshift, which changes a Cysteine to a Valine at codon 1855, and creates a premature stop codon at position 8 of the new reading frame. The newly created stop codon replaces the last 989 amino acids with 7 incorrect ones. Although this variant has not, to our knowledge, been reported in the literature, it is predicted to cause loss of normal protein function through protein truncation. we consider this variant to be pathogenic.

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