Total submissions: 2
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Invitae | RCV003534747 | SCV000836656 | uncertain significance | Familial adenomatous polyposis 1 | 2018-06-04 | criteria provided, single submitter | clinical testing | In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Tolerated"; PolyPhen-2: "Possibly Damaging"; Align-GVGD: "Class C0"). This variant has not been reported in the literature in individuals with APC-related disease. This variant is not present in population databases (ExAC no frequency). This sequence change replaces asparagine with lysine at codon 2402 of the APC protein (p.Asn2402Lys). The asparagine residue is highly conserved and there is a moderate physicochemical difference between asparagine and lysine. |
Ambry Genetics | RCV002369976 | SCV002672368 | uncertain significance | Hereditary cancer-predisposing syndrome | 2022-08-28 | criteria provided, single submitter | clinical testing | The p.N2402K variant (also known as c.7206T>G), located in coding exon 15 of the APC gene, results from a T to G substitution at nucleotide position 7206. The asparagine at codon 2402 is replaced by lysine, an amino acid with similar properties. This amino acid position is conserved. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear. |