ClinVar Miner

Submissions for variant NM_000038.6(APC):c.7428G>A (p.Arg2476=)

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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV004565908 SCV004504476 likely benign Familial adenomatous polyposis 1 2024-04-03 criteria provided, single submitter clinical testing
Ambry Genetics RCV004661724 SCV005151705 likely benign Hereditary cancer-predisposing syndrome 2024-05-25 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Institute for Biomarker Research, Medical Diagnostic Laboratories, L.L.C. RCV004661724 SCV005415618 likely benign Hereditary cancer-predisposing syndrome 2024-11-12 criteria provided, single submitter clinical testing The synonymous variant NM_000038.6(APC):c.7428G>A (p.Arg2476=) has been reported to ClinVar as Likely benign with a status of (2 stars) criteria provided, multiple submitters, no conflicts (Variation ID 2844401 as of 2024-10-03). The p.Arg2476= variant is novel (not in any individuals) in gnomAD. The p.Arg2476= variant is novel (not in any individuals) in 1kG. The p.Arg2476= variant is not predicted to disrupt an existing splice site. The p.Arg2476= variant results in a substitution of a base that is not predicted conserved by GERP++ and PhyloP. For these reasons, this variant has been classified as Likely Benig

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