ClinVar Miner

Submissions for variant NM_000049.4(ASPA):c.236+2T>C

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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001046703 SCV001210617 likely pathogenic Spongy degeneration of central nervous system 2019-05-04 criteria provided, single submitter clinical testing This sequence change affects a donor splice site in intron 1 of the ASPA gene. It is expected to disrupt RNA splicing and likely results in an absent or disrupted protein product. This variant is not present in population databases (ExAC no frequency). This variant has not been reported in the literature in individuals with ASPA-related conditions. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site, but this prediction has not been confirmed by published transcriptional studies. Donor and acceptor splice site variants typically lead to a loss of protein function (PMID: 16199547), and loss-of-function variants in ASPA are known to be pathogenic (PMID: 12638939). In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic.
Natera, Inc. RCV001046703 SCV001463138 likely pathogenic Spongy degeneration of central nervous system 2020-09-16 no assertion criteria provided clinical testing

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