ClinVar Miner

Submissions for variant NM_000051.4(ATM):c.5557G>A (p.Asp1853Asn)

gnomAD frequency: 0.10783  dbSNP: rs1801516
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Total submissions: 24
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV000131720 SCV000186760 benign Hereditary cancer-predisposing syndrome 2015-06-12 criteria provided, single submitter clinical testing This alteration is classified as benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Eurofins Ntd Llc (ga) RCV000116427 SCV000229848 benign not specified 2015-05-21 criteria provided, single submitter clinical testing
PreventionGenetics, part of Exact Sciences RCV000116427 SCV000301674 benign not specified criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV000316554 SCV000367059 benign Ataxia-telangiectasia syndrome 2018-03-06 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as benign is not then subjected to further curation. The score for this variant resulted in a classification of benign for this disease.
Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine RCV000116427 SCV000538367 benign not specified 2016-03-28 criteria provided, single submitter clinical testing Variant identified in a genome or exome case(s) and assessed due to predicted null impact of the variant or pathogenic assertions in the literature or databases. Disclaimer: This variant has not undergone full assessment. The following are preliminary notes: Frequency
ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories RCV000710673 SCV000602550 benign not provided 2023-11-30 criteria provided, single submitter clinical testing
Color Diagnostics, LLC DBA Color Health RCV000131720 SCV000682273 benign Hereditary cancer-predisposing syndrome 2014-11-05 criteria provided, single submitter clinical testing
Athena Diagnostics RCV000710673 SCV000840944 benign not provided 2017-07-12 criteria provided, single submitter clinical testing
Labcorp Genetics (formerly Invitae), Labcorp RCV000316554 SCV001000293 benign Ataxia-telangiectasia syndrome 2024-02-01 criteria provided, single submitter clinical testing
Mendelics RCV000316554 SCV001138521 benign Ataxia-telangiectasia syndrome 2019-05-28 criteria provided, single submitter clinical testing
Genome-Nilou Lab RCV000316554 SCV001750400 benign Ataxia-telangiectasia syndrome 2021-07-01 criteria provided, single submitter clinical testing
GeneDx RCV000710673 SCV001886449 benign not provided 2015-03-03 criteria provided, single submitter clinical testing This variant is associated with the following publications: (PMID: 25591549, 31382929, 28652578, 18502988, 24728327, 16914028, 27599564, 27153395, 17333338, 15756685, 22792358, 22529920, 20396981, 18465141, 17517479, 23585524, 24599715, 19147782, 17351744)
National Health Laboratory Service, Universitas Academic Hospital and University of the Free State RCV002225338 SCV002504734 benign Hereditary breast ovarian cancer syndrome 2022-04-19 criteria provided, single submitter clinical testing
Sema4, Sema4 RCV000131720 SCV002528521 benign Hereditary cancer-predisposing syndrome 2021-05-03 criteria provided, single submitter curation
KCCC/NGS Laboratory, Kuwait Cancer Control Center RCV003315664 SCV004016047 benign Familial cancer of breast 2023-07-07 criteria provided, single submitter clinical testing
Myriad Genetics, Inc. RCV003315664 SCV005083958 benign Familial cancer of breast 2024-05-23 criteria provided, single submitter clinical testing This variant is considered benign. This variant has been observed at a population frequency that is significantly greater than expected given the associated disease prevalence and penetrance.
Breakthrough Genomics, Breakthrough Genomics RCV000710673 SCV005229294 benign not provided criteria provided, single submitter not provided
ITMI RCV000116427 SCV000084286 not provided not specified 2013-09-19 no assertion provided reference population
Genetic Services Laboratory, University of Chicago RCV000116427 SCV000150352 likely benign not specified no assertion criteria provided clinical testing Likely benign based on allele frequency in 1000 Genomes Project or ESP global frequency and its presence in a patient with a rare or unrelated disease phenotype. NOT Sanger confirmed.
Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen RCV000116427 SCV001742085 benign not specified no assertion criteria provided clinical testing
Clinical Genetics Laboratory, Department of Pathology, Netherlands Cancer Institute RCV000116427 SCV001906356 benign not specified no assertion criteria provided clinical testing
Clinical Genetics, Academic Medical Center RCV000116427 SCV001920142 benign not specified no assertion criteria provided clinical testing
Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ RCV000116427 SCV001958422 benign not specified no assertion criteria provided clinical testing
Genome Diagnostics Laboratory, University Medical Center Utrecht RCV000116427 SCV001978240 benign not specified no assertion criteria provided clinical testing

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