ClinVar Miner

Submissions for variant NM_000053.4(ATP7B):c.2390C>T (p.Ser797Phe)

dbSNP: rs1555290883
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Counsyl RCV000664853 SCV000788873 uncertain significance Wilson disease 2017-01-13 criteria provided, single submitter clinical testing
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV003403534 SCV004121943 uncertain significance not specified 2023-10-20 criteria provided, single submitter clinical testing Variant summary: ATP7B c.2390C>T (p.Ser797Phe) results in a non-conservative amino acid change in the encoded protein sequence. Five of five in-silico tools predict a damaging effect of the variant on protein function. The variant was absent in 249506 control chromosomes (gnomAD). The available data on variant occurrences in the general population are insufficient to allow any conclusion about variant significance. c.2390C>T has been reported in the literature in at least one individual affected with Wilson Disease (e.g. Dong_2016, Li_2021, Xu_2023). These reports do not provide unequivocal conclusions about association of the variant with Wilson Disease. To our knowledge, no experimental evidence demonstrating an impact on protein function has been reported. The following publications have been ascertained in the context of this evaluation (PMID: 27022412, 34470610, 36343861). One submitter has cited a clinical-significance assessment for this variant to ClinVar after 2014 and has classified the variant as uncertain significance. Based on the evidence outlined above, the variant was classified as uncertain significance.

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