ClinVar Miner

Submissions for variant NM_000053.4(ATP7B):c.3221C>T (p.Ala1074Val)

gnomAD frequency: 0.00001  dbSNP: rs1206016866
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV000588068 SCV000694442 uncertain significance not provided 2016-07-19 criteria provided, single submitter clinical testing Variant summary: The ATP7B c.3221C>T (p.Ala1074Val) variant involves the alteration of a conserved nucleotide. 5/5 in silico tools predict a damaging outcome for this variant. Ala1074 is highly conserved across species and is located in the P-type ATPase, cytoplasmic domain N of the Copper-transporting ATPase 2 protein. This variant was found in 1/130990 control chromosomes at a frequency of 0.0000076, which does not exceed the estimated maximal expected allele frequency of a pathogenic ATP7B variant (0.0054006). The variant was identified in heterozygous state in one WD patient reported in the literature, but a variant in trans was not identified and co-segregation studies were not done, thus it is unclear if this variant is causal. Because of limited clinical information and the lack of functional studies, the variant was classified as a variant of uncertain significance (VUS) until additional information becomes available.
Fulgent Genetics, Fulgent Genetics RCV001829614 SCV002789053 uncertain significance Wilson disease 2022-05-13 criteria provided, single submitter clinical testing
Mayo Clinic Laboratories, Mayo Clinic RCV000588068 SCV004226656 likely pathogenic not provided 2023-03-28 criteria provided, single submitter clinical testing PP3, PP4, PM2, PM3
Natera, Inc. RCV001829614 SCV002086826 uncertain significance Wilson disease 2020-08-13 no assertion criteria provided clinical testing

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