ClinVar Miner

Submissions for variant NM_000057.4(BLM):c.2096A>G (p.Tyr699Cys)

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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV002424106 SCV002730332 uncertain significance Hereditary cancer-predisposing syndrome 2024-01-13 criteria provided, single submitter clinical testing The p.Y699C variant (also known as c.2096A>G), located in coding exon 8 of the BLM gene, results from an A to G substitution at nucleotide position 2096. The tyrosine at codon 699 is replaced by cysteine, an amino acid with highly dissimilar properties. This amino acid position is conserved. In addition, this alteration is predicted to be deleterious by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.
Labcorp Genetics (formerly Invitae), Labcorp RCV003101051 SCV003244774 uncertain significance Bloom syndrome 2024-12-18 criteria provided, single submitter clinical testing This sequence change replaces tyrosine, which is neutral and polar, with cysteine, which is neutral and slightly polar, at codon 699 of the BLM protein (p.Tyr699Cys). This variant is present in population databases (no rsID available, gnomAD 0.002%). This variant has not been reported in the literature in individuals affected with BLM-related conditions. ClinVar contains an entry for this variant (Variation ID: 1785794). Invitae Evidence Modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) indicates that this missense variant is expected to disrupt BLM protein function with a positive predictive value of 80%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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