Total submissions: 7
| Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
|---|---|---|---|---|---|---|---|---|
| Evidence- |
RCV000113326 | SCV000300776 | pathogenic | Breast-ovarian cancer, familial 2 | 2016-09-08 | reviewed by expert panel | curation | Variant allele predicted to encode a truncated non-functional protein. |
| Invitae | RCV000044460 | SCV000072473 | pathogenic | Hereditary breast and ovarian cancer syndrome | 2018-10-30 | criteria provided, single submitter | clinical testing | This sequence change creates a premature translational stop signal (p.Glu1550*) in the BRCA2 gene. It is expected to result in an absent or disrupted protein product. This variant is not present in population databases (ExAC no frequency). This variant has been observed in two siblings affected with Fanconi anemia (PMID: 14670928). Loss-of-function variants in BRCA2 are known to be pathogenic (PMID: 20104584). For these reasons, this variant has been classified as Pathogenic. |
| Consortium of Investigators of Modifiers of BRCA1/2 |
RCV000113326 | SCV000327066 | pathogenic | Breast-ovarian cancer, familial 2 | 2015-10-02 | criteria provided, single submitter | clinical testing | |
| Ambry Genetics | RCV000571951 | SCV000665039 | pathogenic | Hereditary cancer-predisposing syndrome | 2017-05-04 | criteria provided, single submitter | clinical testing | Lines of evidence used in support of classification: Alterations resulting in premature truncation (e.g.reading frame shift, nonsense) |
| Integrated Genetics/Laboratory Corporation of America | RCV000044460 | SCV000916974 | pathogenic | Hereditary breast and ovarian cancer syndrome | 2018-05-14 | criteria provided, single submitter | clinical testing | Variant summary: BRCA2 c.4648G>T (p.Glu1550X) results in a premature termination codon, predicted to cause a truncation of the encoded protein or absence of the protein due to nonsense mediated decay, which are commonly known mechanisms for disease. Truncations downstream of this position have been classified as pathogenic by our laboratory (eg.c.4707C>A (p.Tyr1569X), c.4712_4713delAG (p.Glu1571fsX3), c.4808dupA (p.Asn1603fsX6)). The variant was absent in 245688 control chromosomes (in gnomAD). The variant, c.4648G>T, has been reported in the literature in patients affected with Fanconi Anemia (Hirsch 2004) in compound heterozygosity with the variant c.7529T>C (p.Leu2510Pro). These data indicate that the variant may be associated with disease. This publication also reported experimental evidence evaluating an impact on protein function, demonstrating the absence of BRCA2 in cells derived from patients, together with a marked chromosome instability and hypersensitivity to cross-linking agents, consistent with the diagnosis of Fanconi Anemia. Four clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar after 2014 without evidence for independent evaluation. All laboratories classified the variant as pathogenic. Based on the evidence outlined above, the variant was classified as pathogenic. |
| OMIM | RCV000009935 | SCV000030156 | pathogenic | Fanconi anemia, complementation group D1 | 2004-04-01 | no assertion criteria provided | literature only | |
| Breast Cancer Information Core |
RCV000113326 | SCV000146461 | pathogenic | Breast-ovarian cancer, familial 2 | 2004-02-20 | no assertion criteria provided | clinical testing |