ClinVar Miner

Submissions for variant NM_000059.4(BRCA2):c.5028T>C (p.Ser1676=)

gnomAD frequency: 0.00001  dbSNP: rs762458631
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Total submissions: 10
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Evidence-based Network for the Interpretation of Germline Mutant Alleles (ENIGMA) RCV000494762 SCV000579027 likely benign Breast-ovarian cancer, familial, susceptibility to, 2 2017-06-29 reviewed by expert panel curation Synonymous substitution variant, with low bioinformatic likelihood to result in a splicing aberration (Splicing prior probability 0.02; http://priors.hci.utah.edu/PRIORS/).
Labcorp Genetics (formerly Invitae), Labcorp RCV000197263 SCV000253021 likely benign Hereditary breast ovarian cancer syndrome 2023-11-25 criteria provided, single submitter clinical testing
GeneDx RCV001722106 SCV000518466 likely benign not provided 2020-01-21 criteria provided, single submitter clinical testing
Ambry Genetics RCV000565599 SCV000664992 likely benign Hereditary cancer-predisposing syndrome 2015-12-15 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Color Diagnostics, LLC DBA Color Health RCV000565599 SCV000683665 likely benign Hereditary cancer-predisposing syndrome 2017-03-08 criteria provided, single submitter clinical testing
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV000440938 SCV000917013 likely benign not specified 2019-08-21 criteria provided, single submitter clinical testing
CHEO Genetics Diagnostic Laboratory, Children's Hospital of Eastern Ontario RCV001798665 SCV002043104 likely benign Breast and/or ovarian cancer 2019-09-11 criteria provided, single submitter clinical testing
Quest Diagnostics Nichols Institute San Juan Capistrano RCV001722106 SCV002047312 benign not provided 2022-10-18 criteria provided, single submitter clinical testing
Fulgent Genetics, Fulgent Genetics RCV002503776 SCV002807577 likely benign Familial cancer of breast; Breast-ovarian cancer, familial, susceptibility to, 2; Fanconi anemia complementation group D1; Medulloblastoma; Wilms tumor 1; Malignant tumor of prostate; Pancreatic cancer, susceptibility to, 2; Glioma susceptibility 3 2021-09-02 criteria provided, single submitter clinical testing
PreventionGenetics, part of Exact Sciences RCV004530183 SCV004726447 likely benign BRCA2-related disorder 2019-07-30 no assertion criteria provided clinical testing This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications).

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