ClinVar Miner

Submissions for variant NM_000059.4(BRCA2):c.7457A>G (p.Asn2486Ser)

dbSNP: rs786203755
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Total submissions: 8
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV000167198 SCV000218035 uncertain significance Hereditary cancer-predisposing syndrome 2023-11-22 criteria provided, single submitter clinical testing The p.N2486S variant (also known as c.7457A>G), located in coding exon 14 of the BRCA2 gene, results from an A to G substitution at nucleotide position 7457. The asparagine at codon 2486 is replaced by serine, an amino acid with highly similar properties. This amino acid position is not well conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.
GeneDx RCV000255521 SCV000321482 likely benign not provided 2020-11-24 criteria provided, single submitter clinical testing Not observed in large population cohorts (Lek et al., 2016); In silico analysis supports that this missense variant does not alter protein structure/function; This variant is associated with the following publications: (PMID: 31131967)
Color Diagnostics, LLC DBA Color Health RCV000167198 SCV000689048 uncertain significance Hereditary cancer-predisposing syndrome 2019-05-03 criteria provided, single submitter clinical testing
Labcorp Genetics (formerly Invitae), Labcorp RCV000637396 SCV000758852 uncertain significance Hereditary breast ovarian cancer syndrome 2024-03-11 criteria provided, single submitter clinical testing This sequence change replaces asparagine, which is neutral and polar, with serine, which is neutral and polar, at codon 2486 of the BRCA2 protein (p.Asn2486Ser). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with BRCA2-related conditions. ClinVar contains an entry for this variant (Variation ID: 187467). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt BRCA2 protein function with a negative predictive value of 95%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Quest Diagnostics Nichols Institute San Juan Capistrano RCV000255521 SCV001133898 uncertain significance not provided 2018-12-03 criteria provided, single submitter clinical testing
Myriad Genetics, Inc. RCV003454420 SCV004186065 likely benign Breast-ovarian cancer, familial, susceptibility to, 2 2023-11-20 criteria provided, single submitter clinical testing This variant is considered likely benign. This variant is strongly associated with less severe personal and family histories of cancer, typical for individuals without pathogenic variants in this gene [PMID: 25085752].
All of Us Research Program, National Institutes of Health RCV003454420 SCV004844407 uncertain significance Breast-ovarian cancer, familial, susceptibility to, 2 2023-08-08 criteria provided, single submitter clinical testing
Baylor Genetics RCV004567333 SCV005059007 uncertain significance Familial cancer of breast 2024-03-08 criteria provided, single submitter clinical testing

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