ClinVar Miner

Submissions for variant NM_000059.4(BRCA2):c.9648+10T>G

gnomAD frequency: 0.00004  dbSNP: rs81002835
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001087714 SCV000073887 likely benign Hereditary breast ovarian cancer syndrome 2023-12-14 criteria provided, single submitter clinical testing
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV000588518 SCV000695258 uncertain significance not provided 2017-06-12 criteria provided, single submitter clinical testing Variant summary: The BRCA2 c.9648+10T>G variant involves the alteration of a non-conserved intronic nucleotide. One in silico tool predicts a benign outcome for this variant. 3/5 splice prediction tools predict an impact on normal splicing. However, these predictions have yet to be confirmed by functional studies. This variant was found in 2/246256 control chromosomes in gnomAD at a frequency of 0.0000081, which does not exceed the estimated maximal expected allele frequency of a pathogenic BRCA2 variant (0.0007503). In addition, multiple clinical diagnostic laboratories/reputable databases classified this variant as uncertain significance, including one database indicating that the variant co-occurred with a potentially pathogenic BRCA1 variant, c.4611_4612insG (p.Gln1537_Gln1538fs). The variant of interest has not, to our knowledge, been reported in affected individuals via publications; nor evaluated for functional impact by in vivo/vitro studies. Because of the absence of clinical information and the lack of functional studies, the variant is classified as a "Variant of Uncertain Significance (VUS)," until additional information becomes available.
Myriad Genetics, Inc. RCV000114141 SCV004020270 likely benign Breast-ovarian cancer, familial, susceptibility to, 2 2023-03-10 criteria provided, single submitter clinical testing This variant is considered likely benign. This variant is strongly associated with less severe personal and family histories of cancer, typical for individuals without pathogenic variants in this gene [PMID: 25085752].
Baylor Genetics RCV003460635 SCV004213639 uncertain significance Familial cancer of breast 2024-02-08 criteria provided, single submitter clinical testing
Breast Cancer Information Core (BIC) (BRCA2) RCV000114141 SCV000147685 uncertain significance Breast-ovarian cancer, familial, susceptibility to, 2 2010-03-10 no assertion criteria provided clinical testing

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