ClinVar Miner

Submissions for variant NM_000077.5(CDKN2A):c.101C>T (p.Ala34Val)

dbSNP: rs1554656344
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV000566680 SCV000669186 uncertain significance Hereditary cancer-predisposing syndrome 2024-07-29 criteria provided, single submitter clinical testing The p.A34V variant (also known as c.101C>T), located in coding exon 1 of the CDKN2A gene, results from a C to T substitution at nucleotide position 101. The alanine at codon 34 is replaced by valine, an amino acid with similar properties. This variant has been identified individually and in conjunction with a pathogenic CDKN2A mutation in an Austrian melanoma cohort (Burgstaller-Muehlbacher S et al. Melanoma Res., 2015 Oct;25:412-20; Müller C et al. Br. J. Dermatol., 2016 Jun;174:1308-17). This amino acid position is not well conserved in available vertebrate species. In addition, the in silico prediction for this alteration is inconclusive. Based on the available evidence, the clinical significance of this variant remains unclear.
Labcorp Genetics (formerly Invitae), Labcorp RCV000706267 SCV000835307 uncertain significance Familial melanoma 2024-11-19 criteria provided, single submitter clinical testing This sequence change replaces alanine, which is neutral and non-polar, with valine, which is neutral and non-polar, at codon 34 of the CDKN2A (p16INK4a) protein (p.Ala34Val). This variant is not present in population databases (gnomAD no frequency). This missense change has been observed in individual(s) with melanoma (PMID: 26225579, 26800492). ClinVar contains an entry for this variant (Variation ID: 483329). An algorithm developed to predict the effect of missense changes on protein structure and function outputs the following: PolyPhen-2: "Benign". The valine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
GeneDx RCV004760611 SCV005370367 uncertain significance not provided 2024-04-03 criteria provided, single submitter clinical testing Not observed at significant frequency in large population cohorts (gnomAD); In silico analysis supports that this missense variant does not alter protein structure/function; This variant is associated with the following publications: (PMID: 19690981, 26225579, 24569790, 34711012, 26800492)

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