ClinVar Miner

Submissions for variant NM_000083.3(CLCN1):c.1627_1628delinsAT (p.Ala543Ile)

dbSNP: rs2116372748
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001909331 SCV002180870 uncertain significance Congenital myotonia, autosomal recessive form; Congenital myotonia, autosomal dominant form 2022-07-09 criteria provided, single submitter clinical testing This sequence change replaces alanine, which is neutral and non-polar, with isoleucine, which is neutral and non-polar, at codon 543 of the CLCN1 protein (p.Ala543Ile). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Not Available"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Not Available"). ClinVar contains an entry for this variant (Variation ID: 1407714). This variant has not been reported in the literature in individuals affected with CLCN1-related conditions. Information on the frequency of this variant in the gnomAD database is not available, as this variant may be reported differently in the database.
GeneDx RCV003319490 SCV004023604 uncertain significance not provided 2024-10-16 criteria provided, single submitter clinical testing Not observed at significant frequency in large population cohorts (gnomAD); In silico analysis supports a deleterious effect on protein structure/function; Has not been previously published as pathogenic or benign to our knowledge
Athena Diagnostics RCV003319490 SCV005622552 uncertain significance not provided 2024-06-24 criteria provided, single submitter clinical testing

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