ClinVar Miner

Submissions for variant NM_000083.3(CLCN1):c.655C>T (p.Leu219=)

gnomAD frequency: 0.00002  dbSNP: rs1427322271
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000616016 SCV000727509 likely benign not specified 2018-02-15 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
Labcorp Genetics (formerly Invitae), Labcorp RCV002064309 SCV002399190 likely benign Congenital myotonia, autosomal recessive form; Congenital myotonia, autosomal dominant form 2023-02-11 criteria provided, single submitter clinical testing
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV000616016 SCV005202554 likely benign not specified 2024-07-12 criteria provided, single submitter clinical testing Variant summary: CLCN1 c.655C>T alters a non-conserved nucleotide resulting in a synonymous change. Consensus agreement among computation tools predict no significant impact on normal splicing. However, these predictions have yet to be confirmed by functional studies. The variant allele was found at a frequency of 8e-06 in 251410 control chromosomes (gnomAD). The available data on variant occurrences in the general population are insufficient to allow any conclusion about variant significance. To our knowledge, no occurrence of c.655C>T in individuals affected with Congenital Myotonia, Autosomal Recessive Form and no experimental evidence demonstrating its impact on protein function have been reported. ClinVar contains an entry for this variant (Variation ID: 515414). Based on the evidence outlined above, the variant was classified as likely benign.

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