ClinVar Miner

Submissions for variant NM_000088.4(COL1A1):c.769G>C (p.Gly257Arg)

dbSNP: rs72645321
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV002007244 SCV002228170 pathogenic Osteogenesis imperfecta type I 2021-04-21 criteria provided, single submitter clinical testing For these reasons, this variant has been classified as Pathogenic. Glycine residues within the Gly-Xaa-Yaa repeats of the triple helix domain are required for the structure and stability of fibrillar collagens (PMID: 7695699, 8218237, 19344236). In COL1A1, missense variants at these glycine residues are significantly enriched in individuals with disease (PMID: 9016532, 17078022) compared to the general population (ExAC). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt COL1A1 protein function. This missense change has been observed in individual(s) with osteogenesis imperfecta (PMID: 31447884, Invitae). This variant is not present in population databases (ExAC no frequency). This sequence change replaces glycine with arginine at codon 257 of the COL1A1 protein (p.Gly257Arg). The glycine residue is highly conserved and there is a moderate physicochemical difference between glycine and arginine.

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