ClinVar Miner

Submissions for variant NM_000090.4(COL3A1):c.1770T>C (p.Pro590=)

gnomAD frequency: 0.01481  dbSNP: rs80302667
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Total submissions: 11
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000124400 SCV000167833 benign not specified 2013-02-01 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
PreventionGenetics, part of Exact Sciences RCV000124400 SCV000302020 benign not specified criteria provided, single submitter clinical testing
Ambry Genetics RCV000771266 SCV000317383 benign Familial thoracic aortic aneurysm and aortic dissection 2016-01-07 criteria provided, single submitter clinical testing This alteration is classified as benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Illumina Laboratory Services, Illumina RCV000268814 SCV000425516 benign Ehlers-Danlos syndrome, type 4 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as benign is not then subjected to further curation. The score for this variant resulted in a classification of benign for this disease.
Labcorp Genetics (formerly Invitae), Labcorp RCV000268814 SCV000554699 benign Ehlers-Danlos syndrome, type 4 2025-02-03 criteria provided, single submitter clinical testing
ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories RCV001812006 SCV000885226 benign not provided 2021-01-29 criteria provided, single submitter clinical testing
Color Diagnostics, LLC DBA Color Health RCV000771266 SCV000903384 benign Familial thoracic aortic aneurysm and aortic dissection 2018-03-16 criteria provided, single submitter clinical testing
Genome Diagnostics Laboratory, The Hospital for Sick Children RCV002277190 SCV002565608 benign Ehlers-Danlos syndrome 2021-04-12 criteria provided, single submitter clinical testing
All of Us Research Program, National Institutes of Health RCV000268814 SCV004824825 benign Ehlers-Danlos syndrome, type 4 2024-02-05 criteria provided, single submitter clinical testing
Breakthrough Genomics, Breakthrough Genomics RCV001812006 SCV005242028 benign not provided criteria provided, single submitter not provided
Cohesion Phenomics RCV000268814 SCV003836754 benign Ehlers-Danlos syndrome, type 4 2022-09-23 no assertion criteria provided clinical testing

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