ClinVar Miner

Submissions for variant NM_000090.4(COL3A1):c.3228C>T (p.Pro1076=)

gnomAD frequency: 0.00006  dbSNP: rs200917999
Minimum review status: Collection method:
Minimum conflict level:
ClinVar version:
Total submissions: 7
Download table as spreadsheet
Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV001703525 SCV000515411 likely benign not provided 2020-01-08 criteria provided, single submitter clinical testing
Ambry Genetics RCV000772006 SCV000738547 likely benign Familial thoracic aortic aneurysm and aortic dissection 2017-03-20 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Color Diagnostics, LLC DBA Color Health RCV000772006 SCV000904962 likely benign Familial thoracic aortic aneurysm and aortic dissection 2018-09-04 criteria provided, single submitter clinical testing
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV000434555 SCV000919239 benign not specified 2017-10-10 criteria provided, single submitter clinical testing Variant summary: The COL3A1 c.3228C>T (p.Pro1076Pro) variant involves the alteration of a non-conserved nucleotide, resulting in a synonymous change. One in silico tool predicts a damaging outcome for this variant. 5/5 splice prediction tools predict no significant impact on normal splicing. ESE finder predicts that this variant may affect ESE sites. However, these predictions have yet to be confirmed by functional studies. This variant was found in 12/246140 control chromosomes, predominantly observed in the Ashkenazi Jewish subpopulation at a frequency of 0.000508 (5/9846). This frequency is about 406 times the estimated maximal expected allele frequency of a pathogenic COL3A1 variant (0.0000013), suggesting this is likely a benign polymorphism found primarily in the populations of Ashkenazi Jewish origin. In addition, one other clinical diagnostic laboratory classified this variant as likely benign. The variant of interest has not, to our knowledge, been reported in affected individuals via publications, nor evaluated for functional impact by in vivo/vitro studies. Taken together, this variant is classified as benign.
Labcorp Genetics (formerly Invitae), Labcorp RCV000868526 SCV001009866 likely benign Ehlers-Danlos syndrome, type 4 2023-12-19 criteria provided, single submitter clinical testing
All of Us Research Program, National Institutes of Health RCV000868526 SCV004829483 likely benign Ehlers-Danlos syndrome, type 4 2023-12-13 criteria provided, single submitter clinical testing
Breakthrough Genomics, Breakthrough Genomics RCV001703525 SCV005262402 likely benign not provided criteria provided, single submitter not provided

The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. Neither the University of Utah nor the National Institutes of Health independently verfies the submitted information. If you have questions about the information contained on this website, please see a health care professional.