ClinVar Miner

Submissions for variant NM_000090.4(COL3A1):c.889G>A (p.Gly297Arg)

dbSNP: rs1553507557
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000018769 SCV001211252 likely pathogenic Ehlers-Danlos syndrome, type 4 2019-03-06 criteria provided, single submitter clinical testing Glycine residues within the Gly-Xaa-Yaa repeats of the triple helix domain are required for the structure and stability of fibrillar collagens (PMID: 7695699, 8218237, 19344236). In COL3A1, variants that affect these glycine residues are significantly enriched in individuals with disease (PMID: 24922459, 25758994) compared to the general population (ExAC). In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. This variant has been observed in a family affected with Ehlers Danlos syndrome (PMID: 12694234). This variant is also known as Gly130Arg in the literature. ClinVar contains an entry for this variant (Variation ID: 17229). This variant is not present in population databases (ExAC no frequency). This sequence change replaces glycine with arginine at codon 297 of the COL3A1 protein (p.Gly297Arg). The glycine residue is highly conserved and there is a moderate physicochemical difference between glycine and arginine.
OMIM RCV000018769 SCV000039052 pathogenic Ehlers-Danlos syndrome, type 4 2003-03-01 no assertion criteria provided literature only

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