ClinVar Miner

Submissions for variant NM_000093.5(COL5A1):c.5372C>A (p.Thr1791Asn)

gnomAD frequency: 0.00001  dbSNP: rs1258210858
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV002241753 SCV001489613 uncertain significance Ehlers-Danlos syndrome, classic type, 1 2023-07-18 criteria provided, single submitter clinical testing This variant is present in population databases (no rsID available, gnomAD 0.0009%). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Experimental studies and prediction algorithms are not available or were not evaluated, and the functional significance of this variant is currently unknown. ClinVar contains an entry for this variant (Variation ID: 1003860). This variant has not been reported in the literature in individuals affected with COL5A1-related conditions. This sequence change replaces threonine, which is neutral and polar, with asparagine, which is neutral and polar, at codon 1791 of the COL5A1 protein (p.Thr1791Asn).
GeneDx RCV001776179 SCV002013718 uncertain significance not provided 2021-08-16 criteria provided, single submitter clinical testing Not observed at a significant frequency in large population cohorts (Lek et al., 2016); In silico analysis supports that this missense variant does not alter protein structure/function; Reported in ClinVar but additional evidence is not available (ClinVar Variant ID 1003860; Landrum et al., 2016); Not located in the triple helical region, where the majority of pathogenic missense variants occur (Symoens et al., 2012; Stenson et al., 2014); Has not been previously published as pathogenic or benign to our knowledge; This variant is associated with the following publications: (PMID: 22696272, 24077912)

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