ClinVar Miner

Submissions for variant NM_000127.3(EXT1):c.838A>G (p.Arg280Gly)

dbSNP: rs1554601483
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000630813 SCV000751780 pathogenic Multiple congenital exostosis 2023-12-22 criteria provided, single submitter clinical testing This sequence change replaces arginine, which is basic and polar, with glycine, which is neutral and non-polar, at codon 280 of the EXT1 protein (p.Arg280Gly). This variant is not present in population databases (gnomAD no frequency). This missense change has been observed in individual(s) with hereditary multiple osteochondromatosis (PMID: 9463333, 9521425, 30806661). ClinVar contains an entry for this variant (Variation ID: 526305). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt EXT1 protein function with a positive predictive value of 80%. Experimental studies have shown that this missense change affects EXT1 function (PMID: 11391482). For these reasons, this variant has been classified as Pathogenic.

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