Total submissions: 3
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Clin |
RCV003476878 | SCV004218512 | likely pathogenic | Marfan syndrome | 2023-12-29 | reviewed by expert panel | curation | The NM_00138 c.3457T>C, is a missense variant in FBN1 predicted to cause a substitution of a cysteine residue by arginine at amino acid 1153 (p.Cys1153Arg) in a calcium binding EGF-like domain. Cysteine residues are believed to be involved in the formation of disulfide bridges which are essential for the protein structure (PM1_strong). This variant has been reported two times in ClinVar: once as likely pathogenic, and once as uncertain significance (Variation ID: 263660). To our knowledge, this variant has not previously been reported in individuals affected with Marfan syndrome in the literature. This variant is not present in gnomAD (PM2_sup; https://gnomad.broadinstitute.org/ v2.1.1). Other missense variants affecting the same residue, including p.Cys1153Ser, Cys1153Phe, and Cys1153Tyr, have been previously reported in individuals with Marfan syndrome (PMID 16222657, 14695540, 24928929, internal data). Computational prediction tools and conservation analysis suggest that this variant may impact the protein (REVEL: 0.944, PP3). The constraint z-score for missense variants affecting FBN1 is 5.06 (PP2). In summary, this variant meets criteria to be classified as likely pathogenic for Marfan syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen FBN1 VCEP: PM1_Strong, PM2_Sup, PP2, PP3. |
Ambry Genetics | RCV000246794 | SCV000318781 | likely pathogenic | Cardiovascular phenotype | 2013-06-25 | criteria provided, single submitter | clinical testing | |
CHEO Genetics Diagnostic Laboratory, |
RCV000770674 | SCV000902135 | uncertain significance | Familial thoracic aortic aneurysm and aortic dissection | 2017-02-07 | criteria provided, single submitter | clinical testing |