ClinVar Miner

Submissions for variant NM_000138.5(FBN1):c.3457T>C (p.Cys1153Arg)

dbSNP: rs886038877
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
ClinGen FBN1 Variant Curation Expert Panel, ClinGen RCV003476878 SCV004218512 likely pathogenic Marfan syndrome 2023-12-29 reviewed by expert panel curation The NM_00138 c.3457T>C, is a missense variant in FBN1 predicted to cause a substitution of a cysteine residue by arginine at amino acid 1153 (p.Cys1153Arg) in a calcium binding EGF-like domain. Cysteine residues are believed to be involved in the formation of disulfide bridges which are essential for the protein structure (PM1_strong). This variant has been reported two times in ClinVar: once as likely pathogenic, and once as uncertain significance (Variation ID: 263660). To our knowledge, this variant has not previously been reported in individuals affected with Marfan syndrome in the literature. This variant is not present in gnomAD (PM2_sup; https://gnomad.broadinstitute.org/ v2.1.1). Other missense variants affecting the same residue, including p.Cys1153Ser, Cys1153Phe, and Cys1153Tyr, have been previously reported in individuals with Marfan syndrome (PMID 16222657, 14695540, 24928929, internal data). Computational prediction tools and conservation analysis suggest that this variant may impact the protein (REVEL: 0.944, PP3). The constraint z-score for missense variants affecting FBN1 is 5.06 (PP2). In summary, this variant meets criteria to be classified as likely pathogenic for Marfan syndrome based on the ACMG/AMP criteria applied, as specified by the ClinGen FBN1 VCEP: PM1_Strong, PM2_Sup, PP2, PP3.
Ambry Genetics RCV000246794 SCV000318781 likely pathogenic Cardiovascular phenotype 2013-06-25 criteria provided, single submitter clinical testing
CHEO Genetics Diagnostic Laboratory, Children's Hospital of Eastern Ontario RCV000770674 SCV000902135 uncertain significance Familial thoracic aortic aneurysm and aortic dissection 2017-02-07 criteria provided, single submitter clinical testing

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