ClinVar Miner

Submissions for variant NM_000152.5(GAA):c.1410C>A (p.Asn470Lys)

dbSNP: rs886043068
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001049991 SCV001214076 uncertain significance Glycogen storage disease, type II 2021-08-24 criteria provided, single submitter clinical testing This sequence change replaces asparagine with lysine at codon 470 of the GAA protein (p.Asn470Lys). The asparagine residue is highly conserved and there is a moderate physicochemical difference between asparagine and lysine. This variant is not present in population databases (ExAC no frequency). This variant has not been reported in the literature in individuals affected with GAA-related conditions. Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be disruptive. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may create or strengthen a splice site. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Baylor Genetics RCV001049991 SCV001524476 uncertain significance Glycogen storage disease, type II 2019-02-20 criteria provided, single submitter clinical testing This variant was determined to be of uncertain significance according to ACMG Guidelines, 2015 [PMID:25741868].
Genome-Nilou Lab RCV001049991 SCV002027272 uncertain significance Glycogen storage disease, type II 2021-09-05 criteria provided, single submitter clinical testing

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