ClinVar Miner

Submissions for variant NM_000152.5(GAA):c.1650del (p.Thr551fs)

dbSNP: rs766398206
Minimum review status: Collection method:
Minimum conflict level:
ClinVar version:
Total submissions: 1
Download table as spreadsheet
Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001872388 SCV002124755 pathogenic Glycogen storage disease, type II 2023-11-12 criteria provided, single submitter clinical testing This sequence change creates a premature translational stop signal (p.Thr551Profs*27) in the GAA gene. It is expected to result in an absent or disrupted protein product. Loss-of-function variants in GAA are known to be pathogenic (PMID: 18425781, 22252923). The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database. This premature translational stop signal has been observed in individual(s) with glycogen storage disease type II (PMID: 27649523, 28900456). ClinVar contains an entry for this variant (Variation ID: 1359988). For these reasons, this variant has been classified as Pathogenic.

The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. Neither the University of Utah nor the National Institutes of Health independently verfies the submitted information. If you have questions about the information contained on this website, please see a health care professional.