ClinVar Miner

Submissions for variant NM_000161.3(GCH1):c.281C>A (p.Thr94Lys)

dbSNP: rs1566687244
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000689484 SCV000817138 likely pathogenic Dystonia 5; GTP cyclohydrolase I deficiency 2018-06-25 criteria provided, single submitter clinical testing In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Class C0"). This variant has been observed to segregate with dopa-responsive dystonia(DRD) in a family (PMID: 10457396) and it has also been reported in an individual with DRD (PMID: 15753436). This variant is not present in population databases (ExAC no frequency). This sequence change replaces threonine with lysine at codon 94 of the GCH1 protein (p.Thr94Lys). The threonine residue is highly conserved and there is a moderate physicochemical difference between threonine and lysine.

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