ClinVar Miner

Submissions for variant NM_000166.6(GJB1):c.282C>A (p.His94Gln)

dbSNP: rs756000896
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000236380 SCV000292796 likely pathogenic not provided 2023-10-04 criteria provided, single submitter clinical testing Not observed at significant frequency in large population cohorts (gnomAD); Missense variants in this gene are often considered pathogenic (HGMD); In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; This variant is associated with the following publications: (PMID: 9361298, 11325342, 16311287, 21280457, 28286897, 18648547)
Labcorp Genetics (formerly Invitae), Labcorp RCV001854850 SCV002146918 pathogenic Charcot-Marie-Tooth Neuropathy X 2024-06-04 criteria provided, single submitter clinical testing This sequence change replaces histidine, which is basic and polar, with glutamine, which is neutral and polar, at codon 94 of the GJB1 protein (p.His94Gln). This variant is not present in population databases (gnomAD no frequency). This missense change has been observed in individuals with GJB1-related conditions (PMID: 11325342, 11571214, 14680548, 18379723, 28286897). ClinVar contains an entry for this variant (Variation ID: 245724). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt GJB1 protein function with a positive predictive value of 80%. Experimental studies have shown that this missense change affects GJB1 function (PMID: 11325342). This variant disrupts the p.His94 amino acid residue in GJB1. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 11325342, 28768847; Invitae). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. For these reasons, this variant has been classified as Pathogenic.
Inherited Neuropathy Consortium RCV000789853 SCV000929238 uncertain significance Charcot-Marie-Tooth disease no assertion criteria provided literature only

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