ClinVar Miner

Submissions for variant NM_000178.4(GSS):c.598G>A (p.Gly200Ser)

gnomAD frequency: 0.00040  dbSNP: rs193267972
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001971100 SCV002258785 uncertain significance Inherited glutathione synthetase deficiency 2021-09-24 criteria provided, single submitter clinical testing This sequence change replaces glycine with serine at codon 200 of the GSS protein (p.Gly200Ser). The glycine residue is moderately conserved and there is a small physicochemical difference between glycine and serine. This variant is present in population databases (rs193267972, ExAC 0.1%). This variant has not been reported in the literature in individuals with GSS-related conditions. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Tolerated"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Class C0"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV002573395 SCV003715251 likely benign Inborn genetic diseases 2022-09-19 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories RCV003738121 SCV004563469 uncertain significance not provided 2023-10-27 criteria provided, single submitter clinical testing

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