ClinVar Miner

Submissions for variant NM_000179.2(MSH6):c.3968T>C (p.Phe1323Ser) (rs1051564593)

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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV000491517 SCV000580283 uncertain significance Hereditary cancer-predisposing syndrome 2017-11-01 criteria provided, single submitter clinical testing Lines of evidence used in support of classification: Insufficient or conflicting evidence
Quest Diagnostics Nichols Institute San Juan Capistrano RCV000759147 SCV000888284 uncertain significance not provided 2018-04-07 criteria provided, single submitter clinical testing
Color RCV000491517 SCV000906771 uncertain significance Hereditary cancer-predisposing syndrome 2018-08-27 criteria provided, single submitter clinical testing
Invitae RCV000797850 SCV000937434 uncertain significance Hereditary nonpolyposis colon cancer 2018-09-21 criteria provided, single submitter clinical testing This sequence change replaces phenylalanine with serine at codon 1323 of the MSH6 protein (p.Phe1323Ser). The phenylalanine residue is highly conserved and there is a large physicochemical difference between phenylalanine and serine. This variant is not present in population databases (ExAC no frequency). This variant has not been reported in the literature in individuals with MSH6-related disease. ClinVar contains an entry for this variant (Variation ID: 428382). Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be disruptive, but these predictions have not been confirmed by published functional studies and their clinical significance is uncertain. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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