ClinVar Miner

Submissions for variant NM_000179.3(MSH6):c.3802-6_3802-4del

dbSNP: rs587781932
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV000130291 SCV000185139 likely benign Hereditary cancer-predisposing syndrome 2020-02-05 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Invitae RCV001493039 SCV001697661 likely benign Hereditary nonpolyposis colorectal neoplasms 2023-09-08 criteria provided, single submitter clinical testing
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV003230413 SCV003928830 uncertain significance not specified 2023-04-20 criteria provided, single submitter clinical testing
All of Us Research Program, National Institutes of Health RCV003998051 SCV004831151 uncertain significance Lynch syndrome 2023-04-10 criteria provided, single submitter clinical testing This variant causes a deletion of nucleotides CTT in intron 8 of the MSH6 gene. Splice site prediction tools suggest that this variant may not impact RNA splicing. To our knowledge, functional studies have not been reported for this variant. This variant has not been reported in individuals affected with hereditary cancer in the literature. This variant has been identified in 1/250980 chromosomes in the general population by the Genome Aggregation Database (gnomAD). The available evidence is insufficient to determine the role of this variant in disease conclusively. Therefore, this variant is classified as a Variant of Uncertain Significance.

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