ClinVar Miner

Submissions for variant NM_000211.5(ITGB2):c.2125G>A (p.Val709Met)

gnomAD frequency: 0.00001  dbSNP: rs775809970
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001222241 SCV001394335 uncertain significance Leukocyte adhesion deficiency 1 2022-07-13 criteria provided, single submitter clinical testing This sequence change replaces valine, which is neutral and non-polar, with methionine, which is neutral and non-polar, at codon 709 of the ITGB2 protein (p.Val709Met). This variant is present in population databases (rs775809970, gnomAD 0.006%). This variant has not been reported in the literature in individuals affected with ITGB2-related conditions. ClinVar contains an entry for this variant (Variation ID: 950517). Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Possibly Damaging"; Align-GVGD: "Class C15"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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