ClinVar Miner

Submissions for variant NM_000211.5(ITGB2):c.260C>G (p.Thr87Ser)

gnomAD frequency: 0.00003  dbSNP: rs754994927
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000698299 SCV000826958 uncertain significance Leukocyte adhesion deficiency 1 2018-04-10 criteria provided, single submitter clinical testing This sequence change replaces threonine with serine at codon 87 of the ITGB2 protein (p.Thr87Ser). The threonine residue is moderately conserved and there is a small physicochemical difference between threonine and serine. This variant is present in population databases (rs754994927, ExAC 0.004%). This variant has not been reported in the literature in individuals with ITGB2-related disease. Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be tolerated, but these predictions have not been confirmed by published functional studies and their clinical significance is uncertain. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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