ClinVar Miner

Submissions for variant NM_000212.3(ITGB3):c.1815C>T (p.Gly605=)

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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
ClinGen Platelet Disorders Variant Curation Expert Panel, ClinGen RCV004577680 SCV005061670 pathogenic Glanzmann thrombasthenia 2024-02-20 reviewed by expert panel curation The c.1815C>T variant in ITGB3 is a single nucleotide substitution that does not alter the protein sequence (p.Gly605=). RT-PCR and sequencing analysis revealed a 100-nucleotide deletion, corresponding to the 3’-end of exon 11 (c.1814_1913del), in the patient. The deletion results in a shift of the reading frame and the appearance of a premature stop codon (in exon 11 of 15) after 30 altered amino acids (p.Gly605Glufs*31), which is predicted to result in nonsense mediated decay (PVS1). Exon trapping analysis of genomic DNA encompassing either the normal or mutated exon 11, demonstrated that the identified mutation was forcing alternative splicing of β3-mRNA. One proband is reported, meeting the bleeding phenotype criteria. Platelet aggregation in response to ADP, thrombin, collagen and adrenaline was absent and Ristocetin was normal. Flow cytometry analysis revealed undetectable levels of platelet glycoproteins αIIb and β3. (PMID: 15886806) (PP4_Moderate). This variant has been detected homozygous (PMID: 15886806) (PM3_Supporting). This variant is absent from gnomADv4.0.0 (PM2_Supporting). In summary, this variant meets the criteria to be classified as Pathogenic for autosomal recessive Glanzmann Thrombasthenia based on the ACMG/AMP criteria applied, as specified by the ClinGen PD VCEP: PVS1, PP4_Moderate, PM3_Supporting, PM2_Supporting.

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