ClinVar Miner

Submissions for variant NM_000217.3(KCNA1):c.1249C>T (p.Arg417Ter)

dbSNP: rs104894358
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000014435 SCV001234273 pathogenic Episodic ataxia type 1 2025-01-27 criteria provided, single submitter clinical testing This sequence change creates a premature translational stop signal (p.Arg417*) in the KCNA1 gene. While this is not anticipated to result in nonsense mediated decay, it is expected to disrupt the last 79 amino acid(s) of the KCNA1 protein. This variant is not present in population databases (gnomAD no frequency). This premature translational stop signal has been observed in individual(s) with episodic ataxia (PMID: 11026449). In at least one individual the variant was observed to be de novo. ClinVar contains an entry for this variant (Variation ID: 13491). Algorithms developed to predict the effect of variants on gene product structure and function are not available or were not evaluated for this variant. Experimental studies have shown that this premature translational stop signal affects KCNA1 function (PMID: 11026449, 19779067). For these reasons, this variant has been classified as Pathogenic.
OMIM RCV000014435 SCV000034684 pathogenic Episodic ataxia type 1 2000-10-01 no assertion criteria provided literature only

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