ClinVar Miner

Submissions for variant NM_000218.3(KCNQ1):c.1501A>G (p.Thr501Ala)

gnomAD frequency: 0.00001  dbSNP: rs749196110
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001955660 SCV002223361 uncertain significance Long QT syndrome 2022-07-18 criteria provided, single submitter clinical testing This sequence change replaces threonine, which is neutral and polar, with alanine, which is neutral and non-polar, at codon 501 of the KCNQ1 protein (p.Thr501Ala). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be tolerated. ClinVar contains an entry for this variant (Variation ID: 1443548). This variant has not been reported in the literature in individuals affected with KCNQ1-related conditions. This variant is present in population databases (rs749196110, gnomAD 0.003%).
Fulgent Genetics, Fulgent Genetics RCV002492062 SCV002780771 uncertain significance Atrial fibrillation, familial, 3; Beckwith-Wiedemann syndrome; Long QT syndrome 1; Jervell and Lange-Nielsen syndrome 1; Short QT syndrome type 2 2021-10-18 criteria provided, single submitter clinical testing

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