ClinVar Miner

Submissions for variant NM_000222.3(KIT):c.925+3A>G

dbSNP: rs1060502561
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000473478 SCV000550108 uncertain significance Gastrointestinal stromal tumor 2023-04-22 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Variants that disrupt the consensus splice site are a relatively common cause of aberrant splicing (PMID: 17576681, 9536098). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may create or strengthen a splice site. ClinVar contains an entry for this variant (Variation ID: 409768). This variant has not been reported in the literature in individuals affected with KIT-related conditions. This variant is not present in population databases (gnomAD no frequency). This sequence change falls in intron 5 of the KIT gene. It does not directly change the encoded amino acid sequence of the KIT protein. It affects a nucleotide within the consensus splice site.

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