ClinVar Miner

Submissions for variant NM_000245.4(MET):c.2265-29A>T

dbSNP: rs2116937133
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001985545 SCV002246965 uncertain significance Renal cell carcinoma 2021-10-06 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0"). This variant has not been reported in the literature in individuals affected with MET-related conditions. This variant is not present in population databases (ExAC no frequency). This sequence change replaces isoleucine with phenylalanine at codon 764 of the MET protein (p.Ile764Phe). The isoleucine residue is weakly conserved and there is a small physicochemical difference between isoleucine and phenylalanine.
Ambry Genetics RCV003365604 SCV004055789 uncertain significance Hereditary cancer-predisposing syndrome 2023-07-05 criteria provided, single submitter clinical testing The p.I764F variant (also known as c.2290A>T), located in coding exon 9 of the MET gene, results from an A to T substitution at nucleotide position 2290. The isoleucine at codon 764 is replaced by phenylalanine, an amino acid with highly similar properties. This amino acid position is conserved. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

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