ClinVar Miner

Submissions for variant NM_000245.4(MET):c.2698C>G (p.Leu900Val)

gnomAD frequency: 0.00001  dbSNP: rs1398243931
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001058831 SCV001223427 uncertain significance Renal cell carcinoma 2024-01-09 criteria provided, single submitter clinical testing This sequence change replaces leucine, which is neutral and non-polar, with valine, which is neutral and non-polar, at codon 918 of the MET protein (p.Leu918Val). This variant is present in population databases (no rsID available, gnomAD 0.02%). This variant has not been reported in the literature in individuals affected with MET-related conditions. ClinVar contains an entry for this variant (Variation ID: 853915). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt MET protein function with a negative predictive value of 80%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV002436632 SCV002749001 likely benign Hereditary cancer-predisposing syndrome 2024-02-14 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Laboratory of Molecular Epidemiology of Birth Defects, West China Second University Hospital, Sichuan University RCV003153915 SCV003843581 likely pathogenic Ovarian cancer 2022-01-01 criteria provided, single submitter clinical testing
Baylor Genetics RCV003467796 SCV004192512 uncertain significance Autosomal recessive nonsyndromic hearing loss 97 2023-09-08 criteria provided, single submitter clinical testing

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